> 9:11 AM (1): MSFragger Info In total 1065516 peptides. > 9:11 AM (1): MSFragger Info Generated 1065516 modified peptides. > maximum fragment slice size of 4.88 GB. > 9:11 AM (1): MSFragger Info Selected fragment tolerance 0.04 Da and > 9:11 AM (1): MSFragger Info 36255544 fragments to be searched in 1 slices > 9:11 AM (1): MSFragger Info Operating on slice 1 of 1: > 9:12 AM (1): MSFragger Info *MAIN SEARCH DONE IN 0.421 MIN* > 9:12 AM (1): MSFragger Info Picked up _JAVA_OPTIONS: -Xmx8G > 9:12 AM (1): MSFragger Info MSFragger Running Time -0:6:34 > 9:12 AM (1): MSFragger Error Error: An item with the same key has already
> exception: An item with the same key has already been added. > 9:12 AM (1): MSFragger Error Could not process spectra due to following > 9:12 AM Job Execution Info - Job execution until failure took: 6 min > executed at least on one slice of the file but I got this error now: > That did help with reading the file and it looks like a search was You may find the log at: C:\ProgramData\Thermo\Proteome Discoverer 2.3\Logs Reply to this email directly, view it on GitHubĬould you please email us the MagellanServer.log? You are receiving this because you are subscribed to this thread. Lewis_WTB_20191008154845.mzBIN_calibrated 2.5 sĩ:11 AM (1): MSFragger Info Operating on slice 1 of 1:ĩ:11 AM (1): MSFragger Info 36255544 fragments to be searched in 1 slicesĩ:11 AM (1): MSFragger Info Selected fragment tolerance 0.04 Da andĩ:11 AM (1): MSFragger Info Generated 1065516 modified peptides.ĩ:11 AM (1): MSFragger Info In total 1065516 peptides. That did help with reading the file and it looks like a search wasĮxecuted at least on one slice of the file but I got this error now:ĩ:12 AM Job Execution Info - Job execution until failure took: 6 minĩ:12 AM (1): MSFragger Error Could not process spectra due to followingĮxception: An item with the same key has already been added.ĩ:12 AM (1): MSFragger Error Error: An item with the same key has alreadyĩ:12 AM (1): MSFragger Info MSFragger Running Time -0:6:34ĩ:12 AM (1): MSFragger Info Picked up _JAVA_OPTIONS: -Xmx8Gĩ:12 AM (1): MSFragger Info *TOTAL TIME 6.538 MIN**ĩ:12 AM (1): MSFragger Info *MAIN SEARCH DONE IN 0.421 MIN* Selected fragment tolerance 0.04 Da and maximum fragment slice size of 4.88 GB.
Job execution until failure took: 6 min 41 s. That did help with reading the file and it looks like a search was executed at least on one slice of the file but I got this error now: Time Ĭould not process spectra due to following exception: An item with the same key has already been added.Įrror: An item with the same key has already been added.Īt .MSFragger.main(Unknown Source)Īt .MSFragger.b(Unknown Source)Īt .r.(Unknown Source)Īt .t.a(Unknown Source)Īt .b.a(Unknown Source)Īt umich.ms.(ThermoRawFile.java:157)Īt umich.ms.init(ThermoRawFile.java:180)Īt .thermo.ThermoGrpcServerProcess.(ThermoGrpcServerProcess.java:76)Ĭaused by: : Batmass-IO binaries for Thermo support and/or Thermo native libraries not found foundĪt .main(Boot.java:166)Īt .run(Boot.java:340)Īt .invoke(Unknown Source)Īt (Unknown Source)Īt (Unknown Source)Īt 0(Native Method)Įxception in thread "main" Job execution until failure took: 19.5 s. I've also had trouble analyzing RAW files with the FragPipe GUI, but everything works great if I convert the files to mzXML, is there a configuration I'm missing somewhere? Time
I'm trying to implement MS Fragger in PD 2.3, when I run a method with the node I get this error.